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5.08: DNA Sequencing by the Dideoxy Method

Last updated: Mar 30, 2026

Image unavailable: Diagram showing the conversion of ATP to methylthioadenosine. ATP loses pyrophosphate to form DMAPP, which then becomes MTA. Chemical structures and bonds are depicted throughout.
Figure 5.8.2: Sample DNA Sequencing

The DNA to be sequenced is prepared as a single strand. This template DNA is supplied with

  • a mixture of all four normal (deoxy) nucleotides in ample quantities
    • dATP
    • dGTP
    • dCTP
    • dTTP
  • a mixture of all four dideoxynucleotides, each present in limiting quantities and each labeled with a "tag" that fluoresces a different color:
    • ddATP
    • ddGTP
    • ddCTP
    • ddTTP
  • DNA polymerase I
Image unavailable: Colorful DNA sequencing chromatogram with four rows of peaks in red, yellow, black, and gray, each representing different nucleotide bases.
Figure 5.8.3 example of a DNA sequence (455 nucleotides of the lysU gene of E. coli) courtesy of Pharmacia Biotech Inc., Piscataway, NJ